PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4762_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 214aa    MW: 24668.6 Da    PI: 7.3587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4762_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-061034123
                                         EEET..TTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                         + Cp  dCgk++ + + Lk+Hi++H
  cra_locus_4762_iso_4_len_1144_ver_3 10 HICPyaDCGKRYAHEYKLKNHISSH 34
                                         68**********************6 PP

2zf-C2H217.11.6e-057297123
                                         EEET..TTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                         y+Cp   C+k + + + L+ H+r+ H
  cra_locus_4762_iso_4_len_1144_ver_3 72 YTCPyeGCDKAYIHEYKLNLHLRReH 97
                                         9***********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-8136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.05E-6136No hitNo description
SMARTSM003550.00691034IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2451039IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-96695IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.85E-66695No hitNo description
SMARTSM003550.00197297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09772102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKTHSQENYH ICPYADCGKR YAHEYKLKNH ISSHHEKNVV EPTKYVPPAE KPVKTPKSSN  60
ATYASASSDR PYTCPYEGCD KAYIHEYKLN LHLRREHPGH SKEENAKNVQ FTADNDMDEA  120
SDHDPYPAKR SNDKKPSRSK PNLKLPPAKV AQRKGSTASQ ANMSVMKKQW PVKEEVYDEE  180
DSEETEEERD NVVMVGDMQX XXXXXXXXXX RDRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467798.14e-85PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467799.14e-85PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467801.14e-85PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467802.14e-85PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L34e-61Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A068TML96e-86A0A068TML9_COFCA; Uncharacterized protein
TrEMBLA0A0D2QA257e-87A0A0D2QA25_G
TrEMBLA0A0D2RAB01e-86A0A0D2RAB0_G
STRINGVIT_12s0035g00660.t014e-81(Vitis vinifera)